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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4435629_4453793_F

Intron Information:

Intron Rank:
132714
Intron Class:
major
Intron Phase:
Intron Coordinates:
4435629 - 4453793
Intron Length:
18165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.7
81.9
29.7
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
54.2
0.21
1.9
76.56
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021338
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030820
4435262 - 4454191
18930