Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4440511_4453793_F

Intron Information:

Intron Rank:

132721

Intron Class:

major

Intron Phase:

Intron Coordinates:

4440511 - 4453793

Intron Length:

13283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGATC

5'SS Class:

major

3'SS Sequence:

TATTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

ATTTATTTACAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.68

1.1

76.9

38.6

Major BPS

88.7

0.96

0.8

36.5

Major PPT

0.83

0.7

81.9

29.7

Minor 5ss

42.4

-0.8

3.2

60.2

44.5

Minor BPS

54.2

0.21

1.9

76.56

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021338

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045624

4440070 - 4454191

14122