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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4448925_4453793_F

Intron Information:

Intron Rank:
132715
Intron Class:
major
Intron Phase:
Intron Coordinates:
4448925 - 4453793
Intron Length:
4869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.7
81.9
29.7
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
54.2
0.21
1.9
76.56
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021338
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035147
4448699 - 4454191
5493