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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4460649_4461313_R

Intron Information:

Intron Rank:
136540
Intron Class:
major
Intron Phase:
Intron Coordinates:
4460649 - 4461313
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATGT
5'SS Class:
major
3'SS Sequence:
GTAATTTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTATCTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
73.6
37.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75.7
0.58
0.9
73.1
41.7
Minor 5ss
36
-1.6
3
48.8
46.8
Minor BPS
65
0.55
2
84.32
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020904
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047095
4458791 - 4462504
3714