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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4473207_4475366_F

Intron Information:

Intron Rank:
136713
Intron Class:
major
Intron Phase:
Intron Coordinates:
4473207 - 4475366
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TGAATCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.8
41
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
66.9
0.38
0.9
58.5
42.7
Minor 5ss
34.8
-1.7
3.1
45.9
42.4
Minor BPS
64
0.42
1.3
71.32
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023621
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018806
4473184 - 4476444
3261