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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4534605_4534993_F

Intron Information:

Intron Rank:
144819
Intron Class:
major
Intron Phase:
Intron Coordinates:
4534605 - 4534993
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTCC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
62.8
38.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
38.3
-1.3
3.2
50.4
46.4
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028059
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024467
4534529 - 4536109
1581