About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_45489_52152_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
45489 - 52152

Intron Length:
6664

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGAGCGGC

5'SS Class:
strong_major

3'SS Sequence:
TCTCCACCTGCAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GCCTGAT

U12 Branch Point Sequence:
TGGGCCTGATTC

Flanking Amino Acid:
GDARGPPGFKYGIVLDAGSS

Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.2
0.78
0.9
66.6
39.6

Major BPS
61
0.27
1.3
53.3
44.2

Major PPT
77.2
0.61
0.8
70.3
29.4

Minor 5ss
31.2
-2.1
3.3
41.1
45.6

Minor BPS
47.2
-0.2
1.8
55.7
42.9

Associated Gene:

Gene:
ENTPD2

Ensembl Gene ID:

Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

45378 - 57373
11996