Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4711291_4713247_R

Intron Information:

Intron Rank:

139693

Intron Class:

major

Intron Phase:

Intron Coordinates:

4711291 - 4713247

Intron Length:

1957

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACATCCA

5'SS Class:

major

3'SS Sequence:

TTTTGTGCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

AGAAACTGATCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.1

65.1

40.8

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

83.8

0.76

0.9

81.3

36.4

Minor 5ss

32.8

-2

3.1

42.5

44.2

Minor BPS

43.3

-0.5

1.8

50.01

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022610

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033080

4708692 - 4713941

5250