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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4827106_4828016_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4827106 - 4828016
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GCTTTTCTAACC
Flanking Amino Acid:
VLKKARGNLEVPSPDNQKSA
Intron Amino Acid Position:
1944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.4
0.59
0.9
71
38.8
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
58
0.23
1.7
67.01
38.8

Associated Gene:

Gene:
CDK5RAP2
Ensembl Gene ID:
ENSAPLG00000006791
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034842
4826994 - 4905339
78346
ENSAPLT00000007141
4826994 - 4905339
78346