Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4845674_4846815_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4845674 - 4846815

Intron Length:

1142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTGGTTTATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTAAAT

U12 Branch Point Sequence:

TTTGCTCTAAAT

Flanking Amino Acid:

LALLSNKFPPELLMEHLQEI

Intron Amino Acid Position:

1456

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.9

89.8

23.7

Major BPS

69.8

0.49

1.1

75.5

35.2

Major PPT

79.2

0.66

77.7

40.7

Minor 5ss

46.2

-0.4

2.8

67.4

43.6

Minor BPS

59.1

0.36

1.9

81.82

39.6

Associated Gene:

Gene:

CDK5RAP2

Ensembl Gene ID:

ENSAPLG00000006791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043498

4834299 - 4905339

71041

ENSAPLT00000034842

4826994 - 4905339

78346

ENSAPLT00000007141

4826994 - 4905339

78346