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Intron Name: Anas_platyrhynchos_platyrhynchos_18_4847004_4847820_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4847004 - 4847820

Intron Length:

817

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTCAAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

ATTTTTGTAATT

Flanking Amino Acid:

EVTILYELAQRENEKNTTMY

Intron Amino Acid Position:

1393

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.5

1.02

0.7

25.3

Major BPS

81.6

0.78

0.8

24.9

Major PPT

66.1

0.36

1.1

68.1

36.7

Minor 5ss

36.4

-1.5

3.6

55.7

48.5

Minor BPS

60.6

0.41

81.14

35.2

Associated Gene:

Gene:

CDK5RAP2

Ensembl Gene ID:

ENSAPLG00000006791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043498

4834299 - 4905339

71041

ENSAPLT00000034842

4826994 - 4905339

78346

ENSAPLT00000007141

4826994 - 4905339

78346