Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4854546_4855970_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4854546 - 4855970

Intron Length:

1425

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGATAAA

5'SS Class:

major

3'SS Sequence:

CTATATTCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

CCTGCTATATTC

Flanking Amino Acid:

EPAEESTLVRVASLIKLDNS

Intron Amino Acid Position:

1060

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

76.5

34.2

Major BPS

77.7

0.69

83.3

27.7

Major PPT

80.3

0.68

0.9

77.4

36.3

Minor 5ss

-1.9

41.3

45.3

Minor BPS

43.6

-0.5

1.9

49.93

41.7

Associated Gene:

Gene:

CDK5RAP2

Ensembl Gene ID:

ENSAPLG00000006791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043498

4834299 - 4905339

71041

ENSAPLT00000034842

4826994 - 4905339

78346

ENSAPLT00000007141

4826994 - 4905339

78346