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Intron Name: Anas_platyrhynchos_platyrhynchos_18_4856239_4859352_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4856239 - 4859352

Intron Length:

3114

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

ATACCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TTTTATTCAATA

Flanking Amino Acid:

RIFFSRRTNETDSAFLPKKS

Intron Amino Acid Position:

971

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

86.9

22.7

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

80.3

0.68

0.9

77.4

Minor 5ss

45.5

-0.5

2.8

58.5

40.4

Minor BPS

62.7

0.39

1.7

76.52

34.6

Associated Gene:

Gene:

CDK5RAP2

Ensembl Gene ID:

ENSAPLG00000006791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043498

4834299 - 4905339

71041

ENSAPLT00000007141

4826994 - 4905339

78346