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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4856239_4862789_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4856239 - 4862789
Intron Length:
6551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
ATACCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCAATA
Flanking Amino Acid:
VDCPSEMDKQTDSAFLPKKS
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.3
0.68
0.9
77.4
36
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
62.7
0.39
1.7
76.52
34.6

Associated Gene:

Gene:
CDK5RAP2
Ensembl Gene ID:
ENSAPLG00000006791
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034842
4826994 - 4905339
78346