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Intron Name: Anas_platyrhynchos_platyrhynchos_18_4859819_4861980_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4859819 - 4861980

Intron Length:

2162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTGAGTATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAT

U12 Branch Point Sequence:

CCTTCCTGAGTA

Flanking Amino Acid:

RENRASVLESTRQEQMKIVN

Intron Amino Acid Position:

815

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

1.3

81.8

38.5

Major BPS

83.4

0.83

0.8

83.7

25.7

Major PPT

66.9

0.38

61.5

38.9

Minor 5ss

40.7

-1

2.8

50.8

Minor BPS

54.3

0.13

1.7

63.86

Associated Gene:

Gene:

CDK5RAP2

Ensembl Gene ID:

ENSAPLG00000006791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043498

4834299 - 4905339

71041

ENSAPLT00000007141

4826994 - 4905339

78346