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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4896997_4898071_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4896997 - 4898071
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TATGGTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CAATCTATATTA
Flanking Amino Acid:
QEREKLLIKASKAVESLAQG
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78
0.63
0.9
73.8
41.4
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
46.3
-0.2
1.8
53.97
38.8

Associated Gene:

Gene:
CDK5RAP2
Ensembl Gene ID:
ENSAPLG00000006791
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043498
4834299 - 4905339
71041
ENSAPLT00000034842
4826994 - 4905339
78346
ENSAPLT00000007141
4826994 - 4905339
78346