Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4912418_4915967_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4912418 - 4915967

Intron Length:

3550

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGGGC

5'SS Class:

major

3'SS Sequence:

TTTTGTTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTGTTCACT

Flanking Amino Acid:

DPEGTNCTRKEATLGPEARE

Intron Amino Acid Position:

335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

1.2

64.8

41.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.5

0.87

0.7

84.9

29.9

Minor 5ss

35.1

-1.7

3.6

50.2

46.4

Minor BPS

52.2

0.15

2.4

42.2

Associated Gene:

Gene:

MEGF9

Ensembl Gene ID:

ENSAPLG00000031052

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032848

4911131 - 4939088

27958