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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4972939_4987214_F

Intron Information:

Intron Rank:
141485
Intron Class:
major
Intron Phase:
Intron Coordinates:
4972939 - 4987214
Intron Length:
14276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCAAT
U12 Branch Point Sequence:
CGTCCCCCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
59.3
0.23
1.3
66.9
37.7
Major PPT
83
0.74
0.8
81.5
35.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
42.9
-0.5
2
54.02
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026194
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041807
4972323 - 4987757
15435