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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4972939_4993639_F

Intron Information:

Intron Rank:
141481
Intron Class:
major
Intron Phase:
Intron Coordinates:
4972939 - 4993639
Intron Length:
20701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
ACTGTCTGACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
76
0.59
0.9
72.9
37.4
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
43.3
-0.5
1.8
50
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026194
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036273
4972837 - 5005595
32759