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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4994700_5004804_F

Intron Information:

Intron Rank:
141483
Intron Class:
major
Intron Phase:
Intron Coordinates:
4994700 - 5004804
Intron Length:
10105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTC
5'SS Class:
major
3'SS Sequence:
CTCTGGATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61.3
43.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
62.2
0.28
1.1
64
40.7
Minor 5ss
33.6
-1.9
3.7
50.1
46.4
Minor BPS
48.8
-0
2.1
76.82
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026194
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036273
4972837 - 5005595
32759