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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5120830_5125022_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5120830 - 5125022
Intron Length:
4193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTCTGTCTG
5'SS Class:
weak_major
3'SS Sequence:
AAGTTGCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AGTTGTTTATTC
Flanking Amino Acid:
MKLRNSRGIFGLL
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.3
51.7
44.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
70.4
0.46
1
61.9
43.7
Minor 5ss
41.2
-1
2.8
51.9
39.8
Minor BPS
48.7
-0.1
2
60.91
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030226
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041599
5120821 - 5128816
7996