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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5125180_5128649_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5125180 - 5128649
Intron Length:
3470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGACGTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTATTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGTCATTTATTT
Flanking Amino Acid:
CLLSTWPHCDRYPRAFRTSR
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.1
1.2
56.7
38.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
40.7
-1
3.4
60.4
45.5
Minor BPS
50.9
0.11
1.7
71.14
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030226
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041599
5120821 - 5128816
7996