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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5153234_5153355_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5153234 - 5153355
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTGTCCTGCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
86
0.81
0.8
80.7
31.4
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
59.9
0.39
1.9
80.61
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030664
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044588
5133245 - 5176202
42958