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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5153464_5154792_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5153464 - 5154792
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
CTTGCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCTGCTCTCATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.5
36.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79
0.65
0.8
69.6
36.7
Minor 5ss
27.5
-2.6
2.7
28.4
38
Minor BPS
41.2
-0.8
2
43.74
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030664
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044588
5133245 - 5176202
42958