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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5160950_5162339_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5160950 - 5162339
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGAGAT
5'SS Class:
major
3'SS Sequence:
TTATGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTGCTTATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.4
36.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.6
0.71
0.8
77.4
36.7
Minor 5ss
35
-1.7
3.6
57.2
46.9
Minor BPS
50.2
0.08
2.3
75.16
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030664
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044588
5133245 - 5176202
42958