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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5168553_5169064_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5168553 - 5169064
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
GAACGTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
51.9
0.06
1.8
59.87
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030664
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044588
5133245 - 5176202
42958