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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5171540_5171779_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
5171540 - 5171779
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CACCCCACACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.2
33.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
57.7
0.17
0.9
48.4
33.6
Minor 5ss
45.4
-0.5
2.8
65.7
39.3
Minor BPS
51.3
0.02
1.8
65.33
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030664
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044588
5133245 - 5176202
42958