About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5177690_5177986_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5177690 - 5177986
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGGACG
5'SS Class:
major
3'SS Sequence:
TCTGCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
CCCATTTCACCT
Flanking Amino Acid:
DEFSVTETLRLNETCVVKNA
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
60.3
44
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
71.7
0.49
0.8
62.2
34.7
Minor 5ss
35.5
-1.6
3.2
51.1
45
Minor BPS
42.5
-0.4
1.7
51.2
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030898
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032074
5177162 - 5179058
1897