Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5179929_5180003_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5179929 - 5180003

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGGAGG

5'SS Class:

major

3'SS Sequence:

GCCTCTCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAC

U12 Branch Point Sequence:

GCCCCCACAGCC

Flanking Amino Acid:

QSPANATAPGLLGTWRYVAG

Intron Amino Acid Position:

283

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

64.3

47.1

Major BPS

-0.3

1.2

49.7

35.3

Major PPT

71.4

0.48

0.8

65.1

30.6

Minor 5ss

31.2

-2.1

3.1

31.4

42.5

Minor BPS

40.9

-0.7

1.9

46.11

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030898

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020528

5177162 - 5184486

7325