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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5180147_5180297_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5180147 - 5180297
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGATGC
5'SS Class:
weak_major
3'SS Sequence:
CCCCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCGAT
U12 Branch Point Sequence:
TCTGCCTCGATT
Flanking Amino Acid:
QELLVTQHVAAGGRCLSNNS
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.3
53.8
40.6
Major BPS
49.5
-0
1.3
49.7
44
Major PPT
73.6
0.53
0.7
68
25.5
Minor 5ss
33.8
-1.8
3
37.2
40.6
Minor BPS
58.4
0.35
1.7
74.92
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030898
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020528
5177162 - 5184486
7325