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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5188099_5188513_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5188099 - 5188513
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGCTTCTTCACT
Flanking Amino Acid:
YAGIDLAVYETLKNAWLQRY
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.5
41.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
85.7
0.8
0.8
77.7
36.7
Minor 5ss
38.7
-1.3
3.1
51.6
45.2
Minor BPS
65.3
0.56
1.8
79.89
42.3

Associated Gene:

Gene:
SLC25A25
Ensembl Gene ID:
ENSAPLG00000002420
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042999
5186450 - 5194406
7957
ENSAPLT00000023073
5185308 - 5207058
21751
ENSAPLT00000020313
5186450 - 5208002
21553
ENSAPLT00000002452
5184987 - 5194406
9420
ENSAPLT00000046999
5187172 - 5200005
12834