About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5188682_5188927_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5188682 - 5188927
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGGGTCTTCATG
Flanking Amino Acid:
IAQSSIYPMEVLKTRMALRK
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.6
0.55
0.9
65.8
40.9
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
46.9
-0.3
1.9
50.75
44.3

Associated Gene:

Gene:
SLC25A25
Ensembl Gene ID:
ENSAPLG00000002420
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002452
5184987 - 5194406
9420
ENSAPLT00000046999
5187172 - 5200005
12834
ENSAPLT00000042999
5186450 - 5194406
7957
ENSAPLT00000023073
5185308 - 5207058
21751
ENSAPLT00000020313
5186450 - 5208002
21553