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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5190189_5190907_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5190189 - 5190907
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TACATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAACA
Flanking Amino Acid:
EIILYWKHSTIFDVGENLTV
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.1
32.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.1
0.72
0.9
76.6
37
Minor 5ss
35.6
-1.6
3.1
50.4
45.6
Minor BPS
72.3
0.69
1.5
80.34
35.1

Associated Gene:

Gene:
SLC25A25
Ensembl Gene ID:
ENSAPLG00000002420
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042999
5186450 - 5194406
7957
ENSAPLT00000023073
5185308 - 5207058
21751
ENSAPLT00000020313
5186450 - 5208002
21553
ENSAPLT00000046999
5187172 - 5200005
12834
ENSAPLT00000002452
5184987 - 5194406
9420