About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5191020_5191785_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5191020 - 5191785
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TAAATCTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAATGATAAATC
Flanking Amino Acid:
SEQQAEKILKSMDKNGTMTI
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.4
0.53
0.9
70.5
40.5
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
44.8
-0.4
2.2
57.47
41.2

Associated Gene:

Gene:
SLC25A25
Ensembl Gene ID:
ENSAPLG00000002420
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023073
5185308 - 5207058
21751
ENSAPLT00000020313
5186450 - 5208002
21553
ENSAPLT00000002452
5184987 - 5194406
9420
ENSAPLT00000042999
5186450 - 5194406
7957