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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5191352_5191785_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5191352 - 5191785
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTGTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
CCTCTGCAACCT
Flanking Amino Acid:
SEQQAEKILKRIRTGHFWGP
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
62.6
0.28
1.1
60.5
44.8
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
32.8
-1.2
2.4
48.51
44.8

Associated Gene:

Gene:
SLC25A25
Ensembl Gene ID:
ENSAPLG00000002420
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046999
5187172 - 5200005
12834