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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5191874_5191961_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5191874 - 5191961
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CGTACTTGAACT
Flanking Amino Acid:
VFKSLDKKNDGRIDAQEIVQ
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.9
40.1
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
81.6
0.71
0.8
76.5
31.9
Minor 5ss
37.7
-1.4
3.3
48.2
42.1
Minor BPS
61.3
0.43
1.5
74.45
42.1

Associated Gene:

Gene:
SLC25A25
Ensembl Gene ID:
ENSAPLG00000002420
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023073
5185308 - 5207058
21751
ENSAPLT00000020313
5186450 - 5208002
21553
ENSAPLT00000002452
5184987 - 5194406
9420
ENSAPLT00000046999
5187172 - 5200005
12834
ENSAPLT00000042999
5186450 - 5194406
7957