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Intron Name: Anas_platyrhynchos_platyrhynchos_18_5208439_5209019_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5208439 - 5209019

Intron Length:

581

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTGCG

5'SS Class:

major

3'SS Sequence:

CCTTTGTTCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTTAC

U12 Branch Point Sequence:

TGCTCCTTACCC

Flanking Amino Acid:

AAAATVTLTQIPAETTYHSL

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

59.5

39.8

Major BPS

68.9

0.47

59.6

38.6

Major PPT

81.6

0.71

0.8

79.6

32.4

Minor 5ss

28.8

-2.4

29.1

36.7

Minor BPS

69.3

0.59

1.6

75.07

41.7

Associated Gene:

Gene:

NAIF1

Ensembl Gene ID:

ENSAPLG00000002142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002140

5207904 - 5209720

1817