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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5219278_5235755_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5219278 - 5235755
Intron Length:
16478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
TGTTTTCTCACA
Flanking Amino Acid:
DGGDFASLSTREEVQENCVR
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
85.1
0.79
0.8
80.1
32
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
49.1
-0
2
68.01
38.6

Associated Gene:

Gene:
FAM102A
Ensembl Gene ID:
ENSAPLG00000001915
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002010
5218639 - 5248421
29783