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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5240525_5243462_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5240525 - 5243462
Intron Length:
2938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
CTTCCGATCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CACATCCTAACA
Flanking Amino Acid:
SLLSGDPCFKTPPSTAKSIT
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
78.3
32.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
72
0.5
0.9
65.5
34.6
Minor 5ss
40.7
-1
2.9
51.8
38.6
Minor BPS
49.3
-0
1.7
57.46
41.8

Associated Gene:

Gene:
FAM102A
Ensembl Gene ID:
ENSAPLG00000001915
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002010
5218639 - 5248421
29783