Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5245614_5246423_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5245614 - 5246423

Intron Length:

810

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTATCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATTTTGATACCT

Flanking Amino Acid:

QDFTDVSNTEDSNLRLFVSR

Intron Amino Acid Position:

345

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.8

71.2

34.5

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

86.8

0.83

0.7

81.8

28.9

Minor 5ss

24.3

-3

3.1

29.7

43.1

Minor BPS

46.3

-0.2

2.4

74.59

42.3

Associated Gene:

Gene:

FAM102A

Ensembl Gene ID:

ENSAPLG00000001915

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002010

5218639 - 5248421

29783