About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5325663_5325808_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5325663 - 5325808
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
CCCCCCCCACCC
Flanking Amino Acid:
KPLTKMGFDEIFLINLVRRP
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
80.9
0.7
0.7
73.2
31.7
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
39.8
-0.7
2
44.52
43.6

Associated Gene:

Gene:
CERCAM
Ensembl Gene ID:
ENSAPLG00000023317
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018529
5320712 - 5331485
10774