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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5361471_5361649_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5361471 - 5361649
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAC
U12 Branch Point Sequence:
GCTTCCCTGATT
Flanking Amino Acid:
PDGVCIRCQPGEPGQLVGRI
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
64.5
0.36
1.2
69.3
37.7
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
61.9
0.45
1.7
76.64
40.1

Associated Gene:

Gene:
SLC27A4
Ensembl Gene ID:
ENSAPLG00000008614
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008987
5359736 - 5365467
5732