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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5362219_5362601_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5362219 - 5362601
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGCCA
5'SS Class:
major
3'SS Sequence:
TCTGCCCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GGGTCCTGATGT
Flanking Amino Acid:
WEDCVKYNCTIVQYIGEICR
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
59.6
40.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
67.6
0.4
0.8
58.8
33
Minor 5ss
26.1
-2.7
3.1
31.7
42.2
Minor BPS
46.6
-0.1
2
62.5
46.8

Associated Gene:

Gene:
SLC27A4
Ensembl Gene ID:
ENSAPLG00000008614
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008987
5359736 - 5365467
5732