About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5377559_5377972_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5377559 - 5377972
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGGGTAAC
5'SS Class:
major
3'SS Sequence:
GGTGTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTCACTC
Flanking Amino Acid:
RAQREPPRALELNEAPEPPP
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
68.8
38
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
69.6
0.44
1.1
65.2
45.5
Minor 5ss
29.7
-2.3
2.9
36.5
40.9
Minor BPS
51.3
0.02
1.9
61.86
44.3

Associated Gene:

Gene:
TRUB2
Ensembl Gene ID:
ENSAPLG00000009254
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020683
5377243 - 5381212
3970