Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5380300_5380916_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5380300 - 5380916

Intron Length:

617

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGACTG

5'SS Class:

major

3'SS Sequence:

TCTGACCTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

TGTTCTTAAAGA

Flanking Amino Acid:

LQFALPEFQLEIHCVHETQQ

Intron Amino Acid Position:

211

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

66.4

45.1

Major BPS

82.2

0.8

71.9

35.8

Major PPT

76.2

0.59

0.9

40.6

Minor 5ss

34.2

-1.8

3.5

46.9

48.4

Minor BPS

57.6

0.23

71.5

41.1

Associated Gene:

Gene:

TRUB2

Ensembl Gene ID:

ENSAPLG00000009254

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020683

5377243 - 5381212

3970

ENSAPLT00000009630

5377788 - 5381212

3425