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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5388229_5392554_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5388229 - 5392554
Intron Length:
4326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGTATTAATT
Flanking Amino Acid:
DSFLKVKVSHMRRKGRYGKP
Intron Amino Acid Position:
1344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
66.3
0.59
1.7
84.39
36.6

Associated Gene:

Gene:
PPP1R26
Ensembl Gene ID:
ENSAPLG00000028234
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037397
5386913 - 5398512
11600