About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_548259_549543_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
548259 - 549543
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGGTCA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
PLREEQIIYAASDAYCLLEI
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
61.9
39.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
38.5
-1.3
3
48.3
47.4
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
EXD3
Ensembl Gene ID:
ENSAPLG00000015358
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018673
399892 - 700027
300136
ENSAPLT00000018211
399892 - 700027
300136
ENSAPLT00000016015
399892 - 700027
300136