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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_549740_550818_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
549740 - 550818
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGTG
5'SS Class:
major
3'SS Sequence:
CTTTTTCCATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTTATATCC
Flanking Amino Acid:
VVDLLTVDKQLQKASIDWKK
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
70.6
39.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.5
0.73
0.8
82.5
27.8
Minor 5ss
34.5
-1.8
3.7
46.7
43.3
Minor BPS
50.7
0
1.8
67.41
38.2

Associated Gene:

Gene:
EXD3
Ensembl Gene ID:
ENSAPLG00000015358
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018673
399892 - 700027
300136
ENSAPLT00000018211
399892 - 700027
300136
ENSAPLT00000016015
399892 - 700027
300136