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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_552165_557743_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
552165 - 557743
Intron Length:
5579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
CATTGTTTAAAG
Flanking Amino Acid:
DELQKLKIQESVEEATKAEK
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
77.4
0.62
0.9
72.7
37.5
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
50.5
-0.1
2
57.33
44.3

Associated Gene:

Gene:
EXD3
Ensembl Gene ID:
ENSAPLG00000015358
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018673
399892 - 700027
300136
ENSAPLT00000018211
399892 - 700027
300136
ENSAPLT00000016015
399892 - 700027
300136