Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_5603465_5603908_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5603465 - 5603908

Intron Length:

444

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTC|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

TGATGTTTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TGATGTTTTACA

Flanking Amino Acid:

DGLRGIPGPVGEQGLPGSPG

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.3

79.6

35.4

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

0.65

72.4

42.4

Minor 5ss

37.7

-1.4

39.1

Minor BPS

49.6

-0

2.1

64.53

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021854

5591178 - 5607342

16165